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Bhardwaj Lab

Publications

Below is a list of our selected publications. ( `*` = equal contribution )
Single-cell multi-omic analysis reveals principles of transcription-chromatin interaction during embryogenesis

Bhardwaj V, Griffa A, Viñas Gaza H, Zeller P, van Oudenaarden A

2024 biorXiv
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User-friendly exploration of epigenomic data in single cells using sincei

Bhardwaj V, Mourragui S

2024 biorXiv
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T-ChIC: multi-omic detection of histone modifications and full-length transcriptomes in the same single cell

Zeller P, Blotenburg M, Bhardwaj V, de Barbanson BA, Salmen F, van Oudenaarden A.

2024 biorXiv
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Single-cell sortChIC identifies hierarchical chromatin dynamics during hematopoiesis

Zeller* P, Yeung* J, Gaza HV, de Barbanson BA, Bhardwaj V, Florescu M, van der Linden R, van Oudenaarden A.

2023 Nature Genetics
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pyGenomeTracks: reproducible plots for multivariate genomic datasets.

Lopez-Delisle, L., Rabbani, L., Wolff, J., Bhardwaj, V., Backofen, R., Grüning, B., Ramírez, F., & Manke, T.

2021 Bioinformatics
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MAPCap allows high-resolution detection and differential expression analysis of transcription start sites.

Bhardwaj V*, Semplicio G*, Erdogdu NU, Manke T & Akhtar A

2019 Nature Communications
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snakePipes: facilitating flexible, scalable and integrative epigenomic analysis.

Bhardwaj V*, Heyne S*, Sikora K, Rabbani L, Rauer M, Kilpert F, Richter AS, Ryan DP & Manke T

2019 Bioinformatics
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High-resolution TADs reveal DNA sequences underlying genome organization in flies.

Ramírez F*, Bhardwaj V*, Arrigoni L, Lam KC, Grüning BA, Villaveces J, Habermann B, Akhtar A & Manke T

2018 Nature Communications
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